PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0085.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 293aa    MW: 33542.4 Da    PI: 10.1804
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18131220198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f+++h+ k  e+ ++tlede+g++   k+  ++++    l++GW++F+ +++L +gD +vF+l++ ++f
  Kaladp0022s0085.1.p 131 FVKPMLQSHVTGGFWLGLPQRFCKAHMPK--EDEMMTLEDEDGNESPSKYLADRTG----LSGGWRGFALDHELVDGDALVFQLIRPTKF 214
                          89************************855..5569***************555555....*************************97777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Kaladp0022s0085.1.p 215 --KVYIIR 220
                          ..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-23124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25124222IPR015300DNA-binding pseudobarrel domain
CDDcd100178.23E-29129220No hitNo description
SMARTSM010191.3E-24131222IPR003340B3 DNA binding domain
PfamPF023623.0E-17131220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVAAATSNYE ELRRQRLEEN KKRMEELNLL NLSKSLSAAT PKPSPAKKQW KPKSARKEVD  60
LSAVRRSSRT ADRPQPDYKE GMIEPLGSLR RGPHRRRDLL NRVYASDEFR MYAVQRAEQL  120
ESELGSEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMPKE DEMMTLEDED GNESPSKYLA  180
DRTGLSGGWR GFALDHELVD GDALVFQLIR PTKFKVYIIR VNEHENGDES NEDVADEDGN  240
DVVLLKSVPK AKPRKVAKPR KVAEPSPGTR RSRRKKSSMM RMRMMTQMMI FF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539590.11e-106PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M32e-89Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLF6HQC11e-107F6HQC1_VITVI; Putative uncharacterized protein
STRINGVIT_03s0063g00620.t011e-106(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-85B3 family protein